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[ "benchmark_afsp" ] }, { "page": "benchmark_bdsolos", "title": "Benchmark soilKey classifiers against BDsolos national reference labels", "topics": [ "benchmark_bdsolos" ] }, { "page": "benchmark_isis", "title": "Compare soilKey with ISRIC's names for ISIS profiles", "topics": [ "benchmark_isis" ] }, { "page": "benchmark_lucas_2018", "title": "Run the LUCAS Soil 2018 / ESDB WRB benchmark", "topics": [ "benchmark_lucas_2018" ] }, { "page": "benchmark_natsoil", "title": "Benchmark the Australian order key on NatSoil", "topics": [ "benchmark_natsoil" ] }, { "page": "benchmark_npdb", "title": "Benchmark the Canadian key against the National Pedon Database", "topics": [ "benchmark_npdb" ] }, { "page": "benchmark_performance", "title": "Run the soilKey performance benchmark", "topics": [ "benchmark_performance" ] }, { "page": "benchmark_redape", "title": "Benchmark soilKey SiBCS predictions against the Redape gold standard", "topics": [ "benchmark_redape" ] }, { "page": "benchmark_run_classification", "title": "Run a benchmark across one of the loaded pedon lists", "topics": [ "benchmark_run_classification" ] }, { "page": "benchmark_spectral_fill", "title": "Benchmark the accuracy lift of spectral gap-fill (ON vs OFF), k-fold", "topics": [ "benchmark_spectral_fill" ] }, { "page": "benchmark_unified", "title": "Unified cross-dataset benchmark across SiBCS / WRB / USDA", "topics": [ "benchmark_unified" ] }, { "page": "benchmark_wrb_vs_usda", "title": "Benchmark soilKey WRB predictions against a USDA-derived ground truth", "topics": [ "benchmark_wrb_vs_usda" ] }, { "page": "build_taxon_profiles", "title": "Build per-taxon mean depth profiles for predicted-taxon gap-fill", "topics": [ "build_taxon_profiles" ] }, { "page": "calcaric_material", "title": "Calcaric material (WRB 2022 Ch 3.3.3): \\>= 2% CaCO3 throughout the fine earth, primary carbonates from the parent material.", "topics": [ "calcaric_material" ] }, { "page": "calcic", "title": "Calcic horizon (WRB 2022)", "topics": [ "calcic" ] }, { "page": "cambic", "title": "Cambic horizon (WRB 2022)", "topics": [ "cambic" ] }, { "page": "cambic_aqp", "title": "Cambic horizon via aqp::getCambicBounds()", "topics": [ "cambic_aqp" ] }, { "page": "canonical_reference", "title": "Load a canonical reference dataset from the SoilTaxonomy package", "topics": [ "canonical_reference" ] }, { "page": "canonicalise_kst13ed_gg", "title": "Canonicalise a USDA Great Group label to a KST 13ed-compatible key", "topics": [ "canonicalise_kst13ed_gg" ] }, { "page": "cerosidade", "title": "Cerosidade quantitativa (SiBCS Cap 13, p 207; Cap 1)", "topics": [ "cerosidade" ] }, { "page": "chernic", "title": "Chernic horizon (WRB 2022 3.1.6)", "topics": [ "chernic" ] }, { "page": "chernozem", "title": "Chernozem RSG diagnostic (WRB 2022)", "topics": [ "chernozem" ] }, { "page": "chernozem_strict", "title": "Chernozem RSG gate (strengthened, WRB 2022 Ch 4, p 111)", "topics": [ "chernozem_strict" ] }, { "page": "claric_material", "title": "Claric material (WRB 2022 Ch 3.3.4): light-coloured fine earth with Munsell criteria.", "topics": [ "claric_material" ] }, { "page": "classification_robustness", "title": "Robustness of classification under input perturbation", "topics": [ "classification_robustness" ] }, { "page": "ClassificationResult", "title": "ClassificationResult: structured outcome of running a key", "topics": [ "ClassificationResult" ] }, { "page": "classify_all", "title": "Classify a pedon across all three taxonomic systems", "topics": [ "classify_all" ] }, { "page": "classify_asc3", "title": "Classify a pedon under the Australian Soil Classification", "topics": [ "classify_asc3" ] }, { "page": "classify_asc3_family", "title": "Family of a soil under the Australian Soil Classification", "topics": [ "classify_asc3_family" ] }, { "page": "classify_by_spectral_neighbours", "title": "Classify a soil by spectral similarity to OSSL reference profiles", "topics": [ "classify_by_spectral_neighbours" ] }, { "page": "classify_cssc3", "title": "Classify a pedon under the Canadian System of Soil Classification", "topics": [ "classify_cssc3" ] }, { "page": "classify_csv", "title": "Classify a horizon spreadsheet in all three systems - one file, one line", "topics": [ "classify_csv" ] }, { "page": "classify_from_documents", "title": "Build a fully-classified `PedonRecord` from documents in one call", "topics": [ "classify_from_documents" ] }, { "page": "classify_from_photos", "title": "Classify a soil profile from field photographs alone", "topics": [ "classify_from_photos" ] }, { "page": "classify_hscs2024", "title": "Classify a pedon under the Hungarian diagnostic soil classification", "topics": [ "classify_hscs2024" ] }, { "page": "classify_nzsc4", "title": "Classify a pedon under the New Zealand Soil Classification", "topics": [ "classify_nzsc4" ] }, { "page": "classify_profiles", "title": "Classify many profiles from one horizon table", "topics": [ "classify_profiles" ] }, { "page": "classify_sibcs", "title": "Classifica um pedon segundo o SiBCS 5a edicao (1o + 2o + 3o + 4o niveis)", "topics": [ "classify_sibcs" ] }, { "page": "classify_sibcs_familia", "title": "Classifica um perfil no 5o nivel categorico do SiBCS (Familia)", "topics": [ "classify_sibcs_familia" ] }, { "page": "classify_usda", "title": "Classify a pedon under USDA Soil Taxonomy (13th edition)", "topics": [ "classify_usda" ] }, { "page": "classify_usda_family", "title": "Classify the USDA family (5th level) of a pedon", "topics": [ "classify_usda_family" ] }, { "page": "classify_via_smartsolos_api", "title": "Classify a PedonRecord via Embrapa's SmartSolosExpert REST API", "topics": [ "classify_via_smartsolos_api" ] }, { "page": "classify_with_engine_heuristic", "title": "Classify a pedon with the engine chosen by `pick_engine()`", "topics": [ "classify_with_engine_heuristic" ] }, { "page": "classify_with_uncertainty", "title": "Posterior distribution over classification outcomes", "topics": [ "classify_with_uncertainty" ] }, { "page": "classify_wrb2022", "title": "Classify a pedon under WRB 2022", "topics": [ "classify_wrb2022" ] }, { "page": "clear_kst13_cache", "title": "Clear the in-memory KST13 cache", "topics": [ "clear_kst13_cache" ] }, { "page": "clear_ossl_cache", "title": "Clear the soilKey OSSL cache", "topics": [ "clear_ossl_cache" ] }, { "page": "cohesic", "title": "Cohesic horizon (WRB 2022, Chapter 3.1.7)", "topics": [ "cohesic" ] }, { "page": "combine_priors", "title": "Combine multiple spatial priors via weighted geometric mean", "topics": [ "combine_priors" ] }, { "page": "compare_engines", "title": "Side-by-side comparison of soilKey vs aqp diagnostic engines", "topics": [ "compare_engines" ] }, { "page": "compare_smartsolos", "title": "Cross-validate the local SiBCS classifier against the SmartSolosExpert API", "topics": [ "compare_smartsolos" ] }, { "page": "compute_ki", "title": "Ki (silica:alumina molar) - SiBCS Cap 1, p 32", "topics": [ "compute_ki" ] }, { "page": "compute_kr", "title": "Kr (silica:sesquioxidos molar) - SiBCS Cap 1, p 32", "topics": [ "compute_kr" ] }, { "page": "compute_per_attribute_evidence_grade", "title": "Per-attribute provenance-aware evidence grade", "topics": [ "compute_per_attribute_evidence_grade" ] }, { "page": "continuous_rock", "title": "Continuous rock (WRB 2022 Ch 3.2.5)", "topics": [ "continuous_rock" ] }, { "page": "coverage_report", "title": "Honest taxonomic-completeness report", "topics": [ "coverage_report" ] }, { "page": "cryic_conditions", "title": "Cryic conditions (WRB 2022)", "topics": [ "cryic_conditions" ] }, { "page": "cryic_horizon", "title": "Cryic horizon (WRB 2022, Chapter 3.1.8)", "topics": [ "cryic_horizon" ] }, { "page": "DiagnosticResult", "title": "DiagnosticResult: structured outcome of a diagnostic test", "topics": [ "DiagnosticResult" ] }, { "page": "distrofico", "title": "Solo distrofico (SiBCS Cap 1, p 30)", "topics": [ "distrofico" ] }, { "page": "dolomitic_material", "title": "Dolomitic material (WRB 2022 Ch 3.3.5): \\>= 2% Mg-rich carbonate, CaCO3/MgCO3 < 1.5. v0.3.3: detects via designation pattern 'kdo|do|magn' as proxy when ratio data missing.", "topics": [ "dolomitic_material" ] }, { "page": "download_bdsolos", "title": "Download the BDsolos consulta-publica CSV (experimental, requires chromote)", "topics": [ "download_bdsolos" ] }, { "page": "download_extdata_cache", "title": "Download one or more soilKey lazy-fetch caches from GitHub Release", "topics": [ "download_extdata_cache" ] }, { "page": "download_ossl_subset", "title": "Download an OSSL subset and return an `ossl_library` artefact", "topics": [ "download_ossl_subset" ] }, { "page": "download_ossl_subset_with_labels", "title": "Download an OSSL subset and attach WRB / SiBCS / USDA labels", "topics": [ "download_ossl_subset_with_labels" ] }, { "page": "download_redape_dataset", "title": "Download the curated Redape GeoTab dataset (Vaz et al 2023)", "topics": [ "download_redape_dataset" ] }, { "page": "duric_horizon", "title": "Duric horizon (WRB 2022)", "topics": [ "duric_horizon" ] }, { "page": "duripa", "title": "Duripa (SiBCS Cap 2, p 74; v0.7)", "topics": [ "duripa" ] }, { "page": "ensure_horizon_schema", "title": "Coerce a horizons-like data.frame to the canonical schema", "topics": [ "ensure_horizon_schema" ] }, { "page": "eutrofico", "title": "Solo eutrofico (SiBCS Cap 1, p 30)", "topics": [ "eutrofico" ] }, { "page": "evaluate_rsg_tests", "title": "Evaluate the test block of a single RSG", "topics": [ "evaluate_rsg_tests" ] }, { "page": "extract_horizons_from_pdf", "title": "Extract horizons from a soil description PDF", "topics": [ "extract_horizons_from_pdf" ] }, { "page": "extract_munsell_from_photo", "title": "Extract Munsell color from a profile photo", "topics": [ "extract_munsell_from_photo" ] }, { "page": "extract_site_from_fieldsheet", "title": "Extract site metadata from a field-sheet image", "topics": [ "extract_site_from_fieldsheet" ] }, { "page": "familia_mineralogia_argila_geral", "title": "Familia: mineralogia da fracao argila (geral, nao-Latossolos)", "topics": [ "familia_mineralogia_argila_geral" ] }, { "page": "FamilyAttribute", "title": "Classe S4-like para atributos de Familia (5o nivel SiBCS)", "topics": [ "FamilyAttribute" ] }, { "page": "febr_index_munsell", "title": "Curated index of FEBR datasets that carry Munsell colors", "topics": [ "febr_index_munsell" ] }, { "page": "ferralic", "title": "Ferralic horizon (WRB 2022)", "topics": [ "ferralic" ] }, { "page": "ferralsol", "title": "Ferralsol RSG gate (WRB 2022 Ch 4, p 110)", "topics": [ "ferralsol" ] }, { "page": "ferric", "title": "Ferric horizon (WRB 2022)", "topics": [ "ferric" ] }, { "page": "fetch_aafc_normals", "title": "Climate normals of Agriculture and Agri-Food Canada at given points", "topics": [ "fetch_aafc_normals" ] }, { "page": "fetch_natsoil", "title": "Download NatSoil sites and profiles (CSIRO)", "topics": [ "fetch_natsoil" ] }, { "page": "fibrico", "title": "Material organico fibrico (SiBCS Cap 14)", "topics": [ "fibrico" ] }, { "page": "fill_from_spectra", "title": "Fill missing soil attributes from spectra via OSSL", "topics": [ "fill_from_spectra" ] }, { "page": "fill_munsell_from_spectra", "title": "Fill missing Munsell colors on a PedonRecord from Vis-NIR spectra", "topics": [ "fill_munsell_from_spectra" ] }, { "page": "fluvic_material", "title": "Fluvic material (WRB 2022)", "topics": [ "fluvic_material" ] }, { "page": "folic", "title": "Folic horizon (WRB 2022, Chapter 3.1.12)", "topics": [ "folic" ] }, { "page": "format_wrb_name", "title": "Format a WRB 2022 soil name with qualifiers", "topics": [ "format_wrb_name" ] }, { "page": "fragic", "title": "Fragic horizon (WRB 2022): a high-bulk-density horizon with restricted rooting. v0.3.3: detects via bulk_density_g_cm3 >= 1.65 AND structure grade massive/very firm OR designation pattern 'x'/'Bx'.", "topics": [ "fragic" ] }, { "page": "fragipa", "title": "Fragipa (SiBCS Cap 2, p 73-74; v0.7)", "topics": [ "fragipa" ] }, { "page": "from_aqp", "title": "Convert an aqp SoilProfileCollection back to a list of PedonRecord", "topics": [ "from_aqp" ] }, { "page": "gapfill_by_predicted_taxon", "title": "Fill missing horizon attributes from the predicted taxon's mean profile", "topics": [ "gapfill_by_predicted_taxon" ] }, { "page": "gapfill_derive_horizon", "title": "Fill horizon attributes derivable BY DEFINITION from the same horizon", "topics": [ "gapfill_derive_horizon" ] }, { "page": "gapfill_within_pedon", "title": "Fill interior missing horizon attributes by within-pedon depth interpolation", "topics": [ "gapfill_within_pedon" ] }, { "page": "get_perturbation_scale", "title": "Monte-Carlo perturbation scale for an evidence grade", "topics": [ "get_perturbation_scale" ] }, { "page": "gleyic_properties", "title": "Gleyic properties (WRB 2022)", "topics": [ "gleyic_properties" ] }, { "page": "gleysol", "title": "Gleysol RSG gate (WRB 2022 Ch 4, p 103)", "topics": [ "gleysol" ] }, { "page": "grapes-or-or-grapes", "title": "Default-value-for-NULL operator", "topics": [ "%||%", "grapes-or-or-grapes" ] }, { "page": "GSM_DEPTHS", "title": "Default GlobalSoilMap depth intervals (cm)", "topics": [ "GSM_DEPTHS" ] }, { "page": "gypsic", "title": "Gypsic horizon (WRB 2022)", "topics": [ "gypsic" ] }, { "page": "gypsiric_material", "title": "Gypsiric material (WRB 2022 Ch 3.3.7): \\>= 5% gypsum that is primary (not secondary). Without a \"secondary fraction\" schema column, v0.3.3 treats any layer with caso4_pct >= 5 as gypsiric unless it explicitly carries gypsic-horizon designation.", "topics": [ "gypsiric_material" ] }, { "page": "harmonize_to_gsm", "title": "Harmonise pedons to GlobalSoilMap depth intervals", "topics": [ "harmonize_to_gsm" ] }, { "page": "hemico", "title": "Material organico hemico (SiBCS Cap 14)", "topics": [ "hemico" ] }, { "page": "histic_horizon", "title": "Histic horizon (WRB 2022)", "topics": [ "histic_horizon" ] }, { "page": "horizon_attribute_spec", "title": "Metadata of the horizon attributes", "topics": [ "horizon_attribute_spec" ] }, { "page": "horizon_column_spec", "title": "Canonical horizon column specification", "topics": [ "horizon_column_spec" ] }, { "page": "hortic", "title": "Hortic horizon (WRB 2022): garden / kitchen-midden topsoil. Diagnostic criteria: thickness \\>= 20 cm, dark colour (mollic-like), high P (Mehlich-3 P >= 100 mg/kg or P2O5_1pct_citric >= 175 mg/kg), high SOC.", "topics": [ "hortic" ] }, { "page": "hydragric", "title": "Hydragric horizon (WRB 2022): subsoil hydric horizon under anthraquic. v0.3.3 detects via designation pattern 'Bg|Brg' immediately below an anthraquic-like topsoil.", "topics": [ "hydragric" ] }, { "page": "hypersulfidic_material", "title": "Hypersulfidic material (WRB 2022 Ch 3.3.8): \\>= 0.01% inorganic sulfidic S, pH \\>= 4, capable of severe acidification on aerobic incubation.", "topics": [ "hypersulfidic_material" ] }, { "page": "hyposulfidic_material", "title": "Hyposulfidic material (WRB 2022 Ch 3.3.9): same inorganic sulfidic S and field pH as hypersulfidic but does NOT consist of hypersulfidic (criterion 3 - does not acidify to pH < 4 on aerobic incubation, usually self-neutralised by carbonate). Reachable from v0.9.128: when 'incubation_ph' is measured, a sulfidic + pH>=4 layer that stays >= 4 on incubation is the set-complement of 'hypersulfidic_material' and is reported here. Without an incubation pH the two cannot be told apart, so this returns empty (the layer is reported as potential hypersulfidic instead).", "topics": [ "hyposulfidic_material" ] }, { "page": "inspect_bdsolos_csv", "title": "Diagnostic inspection of a BDsolos CSV before loading", "topics": [ "inspect_bdsolos_csv" ] }, { "page": "irragric", "title": "Irragric horizon (WRB 2022): topsoil thickened by irrigation deposits.", "topics": [ "irragric" ] }, { "page": "isis_citation", "title": "Citation for data read from ISIS", "topics": [ "isis_citation" ] }, { "page": "isis_profile_to_pedon", "title": "Turn one ISIS profile into a PedonRecord", "topics": [ "isis_profile_to_pedon" ] }, { "page": "kastanozem", "title": "Kastanozem RSG diagnostic (WRB 2022)", "topics": [ "kastanozem" ] }, { "page": "kastanozem_strict", "title": "Kastanozem RSG gate (strengthened, WRB 2022 Ch 4, p 112)", "topics": [ "kastanozem_strict" ] }, { "page": "key_trace_table", "title": "Flatten a classification key trace into a tabular form", "topics": [ "key_trace_table" ] }, { "page": "kst13_canonical", "title": "Keys to Soil Taxonomy 13th edition canonical reference", "topics": [ "kst13_canonical" ] }, { "page": "kst13_codes", "title": "Load the canonical KST 13ed code -> taxon-name lookup table", "topics": [ "kst13_codes" ] }, { "page": "kst13_criteria", "title": "Load the canonical KST 13ed criteria for a single taxon code", "topics": [ "kst13_criteria" ] }, { "page": "leptic_features", "title": "Leptic features (WRB 2022)", "topics": [ "leptic_features" ] }, { "page": "limnic_material", "title": "Limnic material (WRB 2022 Ch 3.3.10): subaquatic deposits (coprogenous earth, diatomaceous earth, marl, gyttja). v0.3.3: detects via 'rock_origin %in% c(\"lacustrine\", \"marine\")' or designation pattern.", "topics": [ "limnic_material" ] }, { "page": "limonic", "title": "Limonic horizon (WRB 2022 Ch 3.1)", "topics": [ "limonic" ] }, { "page": "lithic_discontinuity", "title": "Lithic discontinuity (WRB 2022 Ch 3.2.7)", "topics": [ "lithic_discontinuity" ] }, { "page": "lixisol", "title": "Lixisol RSG diagnostic (WRB 2022)", "topics": [ "lixisol" ] }, { "page": "load_afsp_pedons", "title": "Load Africa Soil Profiles (AfSP) v1.2 as PedonRecord objects", "topics": [ "load_afsp_pedons" ] }, { "page": "load_afsp_sample", "title": "Load the bundled AfSP stratified sample (v0.9.77)", "topics": [ "load_afsp_sample" ] }, { "page": "load_bdsolos_csv", "title": "Load a BDsolos CSV export as a list of PedonRecord objects", "topics": [ "load_bdsolos_csv" ] }, { "page": "load_embrapa_pedons", "title": "Load Embrapa dadosolos pedons with reference SiBCS classification", "topics": [ "load_embrapa_pedons" ] }, { "page": "load_febr_pedons", "title": "Load the Embrapa FEBR superconjunto into a list of PedonRecords", "topics": [ "load_febr_pedons" ] }, { "page": "load_kssl_nasis_sample", "title": "Load the bundled KSSL + NASIS morphological-enriched sample (v0.9.75)", "topics": [ "load_kssl_nasis_sample" ] }, { "page": "load_kssl_pedons", "title": "Load NCSS / KSSL pedons with reference USDA Soil Taxonomy classification", "topics": [ "load_kssl_pedons" ] }, { "page": "load_kssl_pedons_gpkg", "title": "Load KSSL / NCSS pedons from the ncss_labdata GeoPackage", "topics": [ "load_kssl_pedons_gpkg" ] }, { "page": "load_kssl_pedons_with_nasis", "title": "Load KSSL pedons enriched with NASIS morphology", "topics": [ "load_kssl_pedons_with_nasis" ] }, { "page": "load_kssl_sample", "title": "Load the bundled KSSL/NCSS lab-data sample (v0.9.74)", "topics": [ "load_kssl_sample" ] }, { "page": "load_lucas_pedons", "title": "Load EU-LUCAS / ESDB pedons with reference WRB classification", "topics": [ "load_lucas_pedons" ] }, { "page": "load_lucas_soil_2018", "title": "Load the LUCAS Soil 2018 Topsoil release as a list of PedonRecord objects", "topics": [ "load_lucas_soil_2018" ] }, { "page": "load_natsoil_pedons", "title": "Read NatSoil profiles as pedons", "topics": [ "load_natsoil_pedons" ] }, { "page": "load_npdb_pedons", "title": "Read the National Pedon Database of Canada", "topics": [ "load_npdb_pedons" ] }, { "page": "load_redape_pedons", "title": "Load curated soil profiles from the Embrapa Redape GeoTab dataset", "topics": [ "load_redape_pedons" ] }, { "page": "load_rules", "title": "Load a soilKey rule set (YAML)", "topics": [ "load_rules" ] }, { "page": "load_wosis_sample", "title": "Load the bundled WoSIS South-America sample", "topics": [ "load_wosis_sample" ] }, { "page": "load_wosis_stratified_sample", "title": "Load the bundled WoSIS stratified RSG-balanced sample (v0.9.73)", "topics": [ "load_wosis_stratified_sample" ] }, { "page": "lookup_esdb", "title": "Look up an ESDB raster value at WGS84 coordinates", "topics": [ "lookup_esdb" ] }, { "page": "lookup_mapbiomas_solos", "title": "Look up a MapBiomas Solos raster value at WGS84 coordinates", "topics": [ "lookup_mapbiomas_solos" ] }, { "page": "lookup_soilgrids", "title": "Look up a SoilGrids 250m soil property at WGS84 coordinates", "topics": [ "lookup_soilgrids" ] }, { "page": "luvisol", "title": "Luvisol RSG diagnostic (WRB 2022)", "topics": [ "luvisol" ] }, { "page": "make_acrisol_canonical", "title": "Build the canonical Acrisol fixture", "topics": [ "make_acrisol_canonical" ] }, { "page": "make_alisol_canonical", "title": "Build the canonical Alisol fixture", "topics": [ "make_alisol_canonical" ] }, { "page": "make_andosol_canonical", "title": "Build the canonical Andosol fixture", "topics": [ "make_andosol_canonical" ] }, { "page": "make_anthrosol_canonical", "title": "Build the canonical Anthrosol fixture", "topics": [ "make_anthrosol_canonical" ] }, { "page": "make_arenosol_canonical", "title": "Build the canonical Arenosol fixture", "topics": [ "make_arenosol_canonical" ] }, { "page": "make_argissolo_canonical", "title": "Perfil canonico de Argissolo (SiBCS 5a ed., Cap 5)", "topics": [ "make_argissolo_canonical" ] }, { "page": "make_asc3_example", "title": "Example pedons for the Australian orders", "topics": [ "make_asc3_example" ] }, { "page": "make_calcisol_canonical", "title": "Build the canonical Calcisol fixture", "topics": [ "make_calcisol_canonical" ] }, { "page": "make_cambisol_canonical", "title": "Build the canonical Cambisol fixture", "topics": [ "make_cambisol_canonical" ] }, { "page": "make_cambissolo_canonical", "title": "Perfil canonico de Cambissolo (SiBCS 5a ed., Cap 6)", "topics": [ "make_cambissolo_canonical" ] }, { "page": "make_chernossolo_canonical", "title": "Perfil canonico de Chernossolo (SiBCS 5a ed., Cap 7)", "topics": [ "make_chernossolo_canonical" ] }, { "page": "make_chernozem_canonical", "title": "Build the canonical Chernozem fixture", "topics": [ "make_chernozem_canonical" ] }, { "page": "make_cryosol_canonical", "title": "Build the canonical Cryosol fixture", "topics": [ "make_cryosol_canonical" ] }, { "page": "make_cssc3_example", "title": "Example pedons for the Canadian orders", "topics": [ "make_cssc3_example" ] }, { "page": "make_durisol_canonical", "title": "Build the canonical Durisol fixture", "topics": [ "make_durisol_canonical" ] }, { "page": "make_empty_horizons", "title": "Build an empty horizons data.table with the canonical schema", "topics": [ "make_empty_horizons" ] }, { "page": "make_espodossolo_canonical", "title": "Perfil canonico de Espodossolo (SiBCS 5a ed., Cap 8)", "topics": [ "make_espodossolo_canonical" ] }, { "page": "make_ferralsol_canonical", "title": "Build the canonical Ferralsol fixture", "topics": [ "make_ferralsol_canonical" ] }, { "page": "make_fluvisol_canonical", "title": "Build the canonical Fluvisol fixture", "topics": [ "make_fluvisol_canonical" ] }, { "page": "make_gleissolo_canonical", "title": "Perfil canonico de Gleissolo (SiBCS 5a ed., Cap 9)", "topics": [ "make_gleissolo_canonical" ] }, { "page": "make_gleysol_canonical", "title": "Build the canonical Gleysol fixture", "topics": [ "make_gleysol_canonical" ] }, { "page": "make_gypsisol_canonical", "title": "Build the canonical Gypsisol fixture", "topics": [ "make_gypsisol_canonical" ] }, { "page": "make_histosol_canonical", "title": "Build the canonical Histosol fixture", "topics": [ "make_histosol_canonical" ] }, { "page": "make_hscs2024_example", "title": "Example pedons for the Hungarian soil types", "topics": [ "make_hscs2024_example" ] }, { "page": "make_kastanozem_canonical", "title": "Build the canonical Kastanozem fixture", "topics": [ "make_kastanozem_canonical" ] }, { "page": "make_latossolo_canonical", "title": "Perfil canonico de Latossolo (SiBCS 5a ed., Cap 10)", "topics": [ "make_latossolo_canonical" ] }, { "page": "make_leptosol_canonical", "title": "Build the canonical Leptosol fixture", "topics": [ "make_leptosol_canonical" ] }, { "page": "make_lixisol_canonical", "title": "Build the canonical Lixisol fixture", "topics": [ "make_lixisol_canonical" ] }, { "page": "make_luvisol_canonical", "title": "Build the canonical Luvisol fixture", "topics": [ "make_luvisol_canonical" ] }, { "page": "make_luvissolo_canonical", "title": "Perfil canonico de Luvissolo (SiBCS 5a ed., Cap 11)", "topics": [ "make_luvissolo_canonical" ] }, { "page": "make_neossolo_canonical", "title": "Perfil canonico de Neossolo Litolico (SiBCS 5a ed., Cap 12)", "topics": [ "make_neossolo_canonical" ] }, { "page": "make_nitisol_canonical", "title": "Build the canonical Nitisol fixture", "topics": [ "make_nitisol_canonical" ] }, { "page": "make_nitossolo_canonical", "title": "Perfil canonico de Nitossolo Vermelho (SiBCS 5a ed., Cap 13)", "topics": [ "make_nitossolo_canonical" ] }, { "page": "make_nzsc4_example", "title": "Example pedons for the New Zealand orders", "topics": [ "make_nzsc4_example" ] }, { "page": "make_organossolo_canonical", "title": "Perfil canonico de Organossolo (SiBCS 5a ed., Cap 14)", "topics": [ "make_organossolo_canonical" ] }, { "page": "make_phaeozem_canonical", "title": "Build the canonical Phaeozem fixture", "topics": [ "make_phaeozem_canonical" ] }, { "page": "make_planosol_canonical", "title": "Build the canonical Planosol fixture", "topics": [ "make_planosol_canonical" ] }, { "page": "make_planossolo_canonical", "title": "Perfil canonico de Planossolo (SiBCS 5a ed., Cap 15)", "topics": [ "make_planossolo_canonical" ] }, { "page": "make_plinthosol_canonical", "title": "Build the canonical Plinthosol fixture", "topics": [ "make_plinthosol_canonical" ] }, { "page": "make_plintossolo_canonical", "title": "Perfil canonico de Plintossolo (SiBCS 5a ed., Cap 16)", "topics": [ "make_plintossolo_canonical" ] }, { "page": "make_podzol_canonical", "title": "Build the canonical Podzol fixture", "topics": [ "make_podzol_canonical" ] }, { "page": "make_retisol_canonical", "title": "Build the canonical Retisol fixture", "topics": [ "make_retisol_canonical" ] }, { "page": "make_solonchak_canonical", "title": "Build the canonical Solonchak fixture", "topics": [ "make_solonchak_canonical" ] }, { "page": "make_solonetz_canonical", "title": "Build the canonical Solonetz fixture", "topics": [ "make_solonetz_canonical" ] }, { "page": "make_stagnosol_canonical", "title": "Build the canonical Stagnosol fixture", "topics": [ "make_stagnosol_canonical" ] }, { "page": "make_synthetic_pedon_with_spectra", "title": "Build a synthetic PedonRecord with attached spectra (testing aid)", "topics": [ "make_synthetic_pedon_with_spectra" ] }, { "page": "make_technosol_canonical", "title": "Build the canonical Technosol fixture", "topics": [ "make_technosol_canonical" ] }, { "page": "make_umbrisol_canonical", "title": "Build the canonical Umbrisol fixture", "topics": [ "make_umbrisol_canonical" ] }, { "page": "make_vertisol_canonical", "title": "Build the canonical Vertisol fixture", "topics": [ "make_vertisol_canonical" ] }, { "page": "make_vertissolo_canonical", "title": "Perfil canonico de Vertissolo (SiBCS 5a ed., Cap 17)", "topics": [ "make_vertissolo_canonical" ] }, { "page": "mineral_material", "title": "Mineral material (WRB 2022 Ch 3.3.11): < 20% SOC AND < 35% volume artefacts containing >= 20% organic carbon. The complement of organic_material / organotechnic_material.", "topics": [ "mineral_material" ] }, { "page": "mollic", "title": "Mollic horizon (WRB 2022)", "topics": [ "mollic" ] }, { "page": "mudanca_textural_abrupta", "title": "Mudanca textural abrupta (SiBCS Cap 1, p 30-31)", "topics": [ "mudanca_textural_abrupta" ] }, { "page": "mulmic_material", "title": "Mulmic material (WRB 2022 Ch 3.3.12): mineral material developed from organic material; \\>= 8% SOC, with low BD, structural / chroma criteria.", "topics": [ "mulmic_material" ] }, { "page": "natric_horizon", "title": "Natric horizon (WRB 2022)", "topics": [ "natric_horizon" ] }, { "page": "nitic_horizon", "title": "Nitic horizon (WRB 2022)", "topics": [ "nitic_horizon" ] }, { "page": "nitisol", "title": "Nitisol RSG gate (WRB 2022)", "topics": [ "nitisol" ] }, { "page": "normalise_febr_sibcs", "title": "Canonicalise FEBR SiBCS names to match soilKey rule outputs.", "topics": [ "normalise_febr_sibcs" ] }, { "page": "normalise_febr_usda", "title": "Normalise FEBR USDA taxon strings to USDA Soil Taxonomy Order", "topics": [ "normalise_febr_usda" ] }, { "page": "normalise_febr_wrb", "title": "Normalise FEBR WRB taxon strings to RSG-only", "topics": [ "normalise_febr_wrb" ] }, { "page": "normalise_kssl_subgroup", "title": "Normalise KSSL USDA subgroup labels for benchmark comparison", "topics": [ "normalise_kssl_subgroup" ] }, { "page": "npdb_dry_colour_model", "title": "Dry colour of A horizons from their moist colour", "topics": [ "npdb_dry_colour_model" ] }, { "page": "npdb_scenario", "title": "A scenario for the NPDB: estimated dry colour and soil climate", "topics": [ "npdb_scenario" ] }, { "page": "npdb_soil_climate", "title": "Soil climate of the Canadian system from climate normals", "topics": [ "npdb_soil_climate" ] }, { "page": "ollama_is_running", "title": "Is the local Ollama HTTP API reachable?", "topics": [ "ollama_is_running" ] }, { "page": "organic_material", "title": "Organic material (WRB 2022 Ch 3.3.13): \\>= 20% SOC + recognisability criteria. v0.3.3: SOC threshold only.", "topics": [ "organic_material" ] }, { "page": "organotechnic_material", "title": "Organotechnic material (WRB 2022 Ch 3.3.14): \\>= 35% volume of artefacts that themselves contain \\>= 20% organic C. Soil itself has < 20% SOC.", "topics": [ "organotechnic_material" ] }, { "page": "ornithogenic_material", "title": "Ornithogenic material (WRB 2022 Ch 3.3.15): bird-influenced topsoil. Mehlich-3 P >= 750 mg/kg + designation pattern 'Aornit|Bornit'.", "topics": [ "ornithogenic_material" ] }, { "page": "ossl_demo_sa", "title": "Synthetic OSSL South America demo subset", "topics": [ "ossl_demo_sa" ] }, { "page": "ossl_library_template", "title": "Canonical schema for an `ossl_library` object", "topics": [ "ossl_library_template" ] }, { "page": "oxic_usda", "title": "Oxic horizon (USDA Soil Taxonomy)", "topics": [ "oxic_usda" ] }, { "page": "panpaic", "title": "Panpaic horizon (WRB 2022 Ch 3.1)", "topics": [ "panpaic" ] }, { "page": "pedon_json_schema", "title": "JSON Schema for a soilKey PedonRecord", "topics": [ "pedon_json_schema" ] }, { "page": "pedon_to_spc", "title": "Convert a soilKey PedonRecord to an aqp SoilProfileCollection", "topics": [ "pedon_to_spc" ] }, { "page": "PedonRecord", "title": "PedonRecord: structured representation of a single pedon", "topics": [ "PedonRecord" ] }, { "page": "pedons_from_spectral_table", "title": "Build PedonRecords with attached Vis-NIR/MIR spectra from a table", "topics": [ "pedons_from_spectral_table" ] }, { "page": "petrocalcic", "title": "Petrocalcic horizon (WRB 2022)", "topics": [ "petrocalcic" ] }, { "page": "petroduric", "title": "Petroduric horizon (WRB 2022): cemented duric.", "topics": [ "petroduric" ] }, { "page": "petrogypsic", "title": "Petrogypsic horizon (WRB 2022): cemented gypsic.", "topics": [ "petrogypsic" ] }, { "page": "petroplinthic", "title": "Petroplinthic horizon (WRB 2022)", "topics": [ "petroplinthic" ] }, { "page": "phaeozem", "title": "Phaeozem RSG diagnostic (WRB 2022)", "topics": [ "phaeozem" ] }, { "page": "pi_to_confidence", "title": "Map a 95% prediction interval to a [0, 1] confidence score", "topics": [ "pi_to_confidence" ] }, { "page": "pick_engine", "title": "Choose the best diagnostic engine for a single pedon", "topics": [ "pick_engine" ] }, { "page": "pick_engine_batch", "title": "Per-pedon batch engine recommendation", "topics": [ "pick_engine_batch" ] }, { "page": "pisoplinthic", "title": "Pisoplinthic horizon (WRB 2022)", "topics": [ "pisoplinthic" ] }, { "page": "plaggic", "title": "Plaggic horizon (WRB 2022): sod-derived topsoil >= 20 cm with low BD AND independent evidence of human input.", "topics": [ "plaggic" ] }, { "page": "planic_features", "title": "Planic features (WRB 2022)", "topics": [ "planic_features" ] }, { "page": "planosol", "title": "Planosol RSG gate (WRB 2022 Ch 4, p 107)", "topics": [ "planosol" ] }, { "page": "plinthic", "title": "Plinthic horizon (WRB 2022)", "topics": [ "plinthic" ] }, { "page": "posterior_classify", "title": "Bayesian posterior classifier (optional)", "topics": [ "posterior_classify" ] }, { "page": "predict_from_spectra", "title": "Predict soil properties from spectra", "topics": [ "predict_from_spectra" ] }, { "page": "predict_lab_from_spectra", "title": "Predict CIE Lab from Vis-NIR reflectance spectra", "topics": [ "predict_lab_from_spectra" ] }, { "page": "predict_munsell_from_spectra", "title": "Predict Munsell hue / value / chroma from Vis-NIR reflectance spectra", "topics": [ "predict_munsell_from_spectra" ] }, { "page": "predict_ossl_mbl", "title": "Memory-based learning prediction against the OSSL library", "topics": [ "predict_ossl_mbl" ] }, { "page": "predict_ossl_plsr_local", "title": "Local PLSR prediction against the OSSL library", "topics": [ "predict_ossl_plsr_local" ] }, { "page": "predict_ossl_pretrained", "title": "Pre-trained OSSL prediction", "topics": [ "predict_ossl_pretrained" ] }, { "page": "predict_xyz_from_spectra", "title": "Predict CIE XYZ tristimulus values from Vis-NIR reflectance spectra", "topics": [ "predict_xyz_from_spectra" ] }, { "page": "predict.soilKey_pls_model", "title": "Predict from a soilKey_pls_model", "topics": [ "predict.soilKey_pls_model" ] }, { "page": "preprocess_spectra", "title": "Pre-process Vis-NIR or MIR spectra", "topics": [ "preprocess_spectra" ] }, { "page": "pretic", "title": "Pretic horizon (WRB 2022): \"Amazonian Dark Earth\" (terra preta de indio) horizon - thick anthropogenic surface with high P, SOC, and incorporated charcoal / pottery.", "topics": [ "pretic" ] }, { "page": "print.soilKey_pls_model", "title": "Print method for soilKey_pls_model", "topics": [ "print.soilKey_pls_model" ] }, { "page": "prior_consistency_check", "title": "Check consistency between a deterministic RSG assignment and a spatial prior", "topics": [ "prior_consistency_check" ] }, { "page": "protocalcic_properties", "title": "Protocalcic properties (WRB 2022 Ch 3.2.8)", "topics": [ "protocalcic_properties" ] }, { "page": "protogypsic_properties", "title": "Protogypsic properties (WRB 2022 Ch 3.2.9): visible secondary gypsum \\>= 1% but below the gypsic gate.", "topics": [ "protogypsic_properties" ] }, { "page": "protovertic", "title": "Protovertic horizon (WRB 2022 Ch 3.1)", "topics": [ "protovertic" ] }, { "page": "read_febr_pedons", "title": "Load FEBR datasets as a list of PedonRecord objects", "topics": [ "read_febr_pedons" ] }, { "page": "read_isis", "title": "Read profiles of the ISRIC World Soil Reference Collection (ISIS)", "topics": [ "read_isis" ] }, { "page": "read_pedon_csv", "title": "Read a horizon spreadsheet (CSV/TSV) into a PedonRecord", "topics": [ "read_pedon_csv" ] }, { "page": "read_spectral_library", "title": "Read a Vis-NIR / MIR reflectance + lab table into an OSSL-shaped library", "topics": [ "read_spectral_library" ] }, { "page": "read_wosis_layers_graphql", "title": "Read one WoSIS profile's layers live from ISRIC", "topics": [ "read_wosis_layers_graphql" ] }, { "page": "read_wosis_profiles_graphql", "title": "Query WoSIS profiles live from ISRIC", "topics": [ "read_wosis_profiles_graphql" ] }, { "page": "reducing_conditions", "title": "Reducing conditions (WRB 2022 Ch 3.2.10) - per-pedon test wrapping 'test_reducing_conditions'.", "topics": [ "reducing_conditions" ] }, { "page": "report", "title": "Render a soilKey classification report", "topics": [ "report" ] }, { "page": "report_html", "title": "Render a soilKey classification report as self-contained HTML", "topics": [ "report_html" ] }, { "page": "report_pdf", "title": "Render a soilKey classification report as PDF", "topics": [ "report_pdf" ] }, { "page": "report_to_qgis", "title": "Export a classification result + pedon to a QGIS GeoPackage", "topics": [ "report_to_qgis" ] }, { "page": "resolve_wrb_qualifiers", "title": "Resolve WRB 2022 qualifiers for a Reference Soil Group", "topics": [ "resolve_wrb_qualifiers" ] }, { "page": "retic_properties", "title": "Retic properties (WRB 2022)", "topics": [ "retic_properties" ] }, { "page": "run_all_benchmarks", "title": "Run the full soilKey benchmark suite and (optionally) write a report", "topics": [ "run_all_benchmarks" ] }, { "page": "run_classify_app", "title": "Launch the soilKey interactive classification Shiny app", "topics": [ "run_classify_app" ] }, { "page": "run_demo", "title": "Launch the soilKey Shiny demo (one-screen GUI)", "topics": [ "run_demo" ] }, { "page": "run_sibcs_grande_grupo", "title": "Resolve o grande grupo (3o nivel) de um pedon classificado em uma subordem SiBCS", "topics": [ "run_sibcs_grande_grupo" ] }, { "page": "run_sibcs_key", "title": "Roda a chave SiBCS 5a edicao sobre um pedon", "topics": [ "run_sibcs_key" ] }, { "page": "run_sibcs_subgrupo", "title": "Resolve o subgrupo (4o nivel) de um pedon classificado em um Grande Grupo SiBCS", "topics": [ "run_sibcs_subgrupo" ] }, { "page": "run_sibcs_subordem", "title": "Resolve a subordem de um pedon ja classificado em uma ordem SiBCS", "topics": [ "run_sibcs_subordem" ] }, { "page": "run_taxa_list", "title": "Iterate a flat taxa list and evaluate tests in canonical order", "topics": [ "run_taxa_list" ] }, { "page": "run_taxonomic_key", "title": "Run a taxonomic key (system-agnostic engine)", "topics": [ "run_taxonomic_key" ] }, { "page": "run_usda_great_group", "title": "Run the USDA Great Group key for a given Suborder", "topics": [ "run_usda_great_group" ] }, { "page": "run_usda_key", "title": "Run the USDA Soil Taxonomy Order key over a pedon", "topics": [ "run_usda_key" ] }, { "page": "run_usda_subgroup", "title": "Run the USDA Subgroup key for a given Great Group", "topics": [ "run_usda_subgroup" ] }, { "page": "run_usda_suborder", "title": "Run the USDA Suborder key for a given Order", "topics": [ "run_usda_suborder" ] }, { "page": "run_wrb_key", "title": "Run the WRB 2022 key over a pedon", "topics": [ "run_wrb_key" ] }, { "page": "salic", "title": "Salic horizon (WRB 2022)", "topics": [ "salic" ] }, { "page": "saprico", "title": "Material organico saprico (SiBCS Cap 14)", "topics": [ "saprico" ] }, { "page": "save_ossl_models", "title": "Save / load trained OSSL-backed PLSR models", "topics": [ "load_ossl_models", "save_ossl_models" ] }, { "page": "shrink_swell_cracks", "title": "Shrink-swell cracks (WRB 2022 Ch 3.2.12) - per-pedon test wrapping 'test_shrink_swell_cracks'.", "topics": [ "shrink_swell_cracks" ] }, { "page": "sideralic_properties", "title": "Sideralic properties (WRB 2022 Ch 3.2.13)", "topics": [ "sideralic_properties" ] }, { "page": "site_attribute_spec", "title": "Metadata of the site properties", "topics": [ "site_attribute_spec" ] }, { "page": "soil_classes_at_location", "title": "Likely soil classes at a geographic location (spatial classification aid)", "topics": [ "soil_classes_at_location" ] }, { "page": "soil_organic_carbon", "title": "Soil organic carbon (WRB 2022 Ch 3.3.16): organic C that does NOT belong to artefacts. v0.3.3: any layer with oc_pct >= 0.1 and artefacts_industrial_pct < 35.", "topics": [ "soil_organic_carbon" ] }, { "page": "soilgrids_usda_lut", "title": "SoilGrids -> USDA Soil Order lookup table (placeholder)", "topics": [ "soilgrids_usda_lut" ] }, { "page": "soilgrids_wrb_lut", "title": "SoilGrids -> WRB code lookup table", "topics": [ "soilgrids_wrb_lut" ] }, { "page": "soilkey_systems", "title": "Classification systems known to soilKey", "topics": [ "soilkey_systems" ] }, { "page": "solimovic_material", "title": "Solimovic material (WRB 2022 Ch 3.3.17): hetero genous mass-movement material on slopes / footslopes (formerly \"colluvic\"). v0.3.3: detects via 'rock_origin == \"colluvial\"' OR 'layer_origin == \"solimovic\"'.", "topics": [ "solimovic_material" ] }, { "page": "sombric", "title": "Sombric horizon (WRB 2022): subsurface accumulation of humus that qualified neither as spodic nor as a true mollic-like horizon (low-base-saturation cool tropical highlands). v0.3.3 detects via designation pattern + OC criteria (BS < 50, OC > 0.6, depth > 25 cm).", "topics": [ "sombric" ] }, { "page": "spatial_prior", "title": "Spatial prior over RSGs (or Orders) at a pedon's location", "topics": [ "spatial_prior" ] }, { "page": "spatial_prior_embrapa", "title": "Embrapa national soil-class spatial prior (Brazil only)", "topics": [ "spatial_prior_embrapa" ] }, { "page": "spatial_prior_soilgrids", "title": "SoilGrids spatial prior", "topics": [ "spatial_prior_soilgrids" ] }, { "page": "spodic", "title": "Spodic horizon (WRB 2022)", "topics": [ "spodic" ] }, { "page": "st_features_canonical", "title": "USDA Soil Taxonomy diagnostic features canonical table", "topics": [ "st_features_canonical" ] }, { "page": "stagnic_properties", "title": "Stagnic properties (WRB 2022)", "topics": [ "stagnic_properties" ] }, { "page": "subgrupo_planossolo_espessos", "title": "Subgrupo \"espessos\" de Planossolos (B planico profundo, > 100 cm)", "topics": [ "subgrupo_planossolo_espessos" ] }, { "page": "subgrupo_planossolo_mesicos", "title": "Subgrupo \"mesicos\" de Planossolos (B planico topo em [50, 100] cm)", "topics": [ "subgrupo_planossolo_mesicos" ] }, { "page": "subgrupo_plintossolo_endico_concrecionario", "title": "Subgrupo \"endico\" de Plintossolos Concrecionarios (topo de horizonte concrecionario >= 40 cm)", "topics": [ "subgrupo_plintossolo_endico_concrecionario" ] }, { "page": "subgrupo_plintossolo_endico_litoplintico", "title": "Subgrupo \"endico\" de Plintossolos Litoplinticos (topo de horizonte litoplintico >= 40 cm)", "topics": [ "subgrupo_plintossolo_endico_litoplintico" ] }, { "page": "subgrupo_plintossolo_espessos", "title": "Subgrupo \"espessos\" de Plintossolos (horizonte plintico topo > 100 cm)", "topics": [ "subgrupo_plintossolo_espessos" ] }, { "page": "takyric_properties", "title": "Takyric properties (WRB 2022 Ch 3.2.15) - per-pedon test wrapping 'test_takyric_surface'.", "topics": [ "takyric_properties" ] }, { "page": "technic_features", "title": "Technic features (WRB 2022)", "topics": [ "technic_features" ] }, { "page": "technic_hard_material", "title": "Technic hard material (WRB 2022 Ch 3.3.18): consolidated human-made material (asphalt, concrete, worked stones).", "topics": [ "technic_hard_material" ] }, { "page": "tephric_material", "title": "Tephric material (WRB 2022 Ch 3.3.19): \\>= 30% volcanic glass in 0.02-2 mm fraction AND no andic / vitric properties.", "topics": [ "tephric_material" ] }, { "page": "terric", "title": "Terric horizon (WRB 2022): topsoil thickened by long-term application of mineral material (sediment / sand additions). v0.3.3: thickness >= 20 cm + designation Au / Apc.", "topics": [ "terric" ] }, { "page": "texture_class_from_pct", "title": "NRCS texture-class shorthand from clay / silt / sand percent", "topics": [ "texture_class_from_pct" ] }, { "page": "thionic", "title": "Thionic horizon (WRB 2022): post-oxidation acid sulfate horizon. Requires sulfidic_s_pct >= 0.01 AND pH(H2O) <= 4.", "topics": [ "thionic" ] }, { "page": "train_pls_from_ossl", "title": "Train pre-trained PLSR models from an OSSL library", "topics": [ "train_pls_from_ossl" ] }, { "page": "tsitelic", "title": "Tsitelic horizon (WRB 2022 Ch 3.1)", "topics": [ "tsitelic" ] }, { "page": "umbric_horizon", "title": "Umbric horizon (WRB 2022)", "topics": [ "umbric_horizon" ] }, { "page": "unrecognised_attributes", "title": "Attributes that soilKey does not recognise", "topics": [ "unrecognised_attributes" ] }, { "page": "usda_to_wrb_rsg", "title": "USDA Soil Taxonomy <-> WRB Reference Soil Group correlation table", "topics": [ "usda_to_wrb_rsg" ] }, { "page": "validate_horizon_geometry", "title": "Validate horizon depth geometry", "topics": [ "validate_horizon_geometry" ] }, { "page": "validate_pedon_json", "title": "Validate a PedonRecord against the JSON schema", "topics": [ "validate_pedon_json" ] }, { "page": "vertic_horizon", "title": "Vertic horizon (WRB 2022 Ch 3.1.40)", "topics": [ "vertic_horizon" ] }, { "page": "vertic_properties", "title": "Vertic properties (WRB 2022)", "topics": [ "vertic_properties" ] }, { "page": "vertisol", "title": "Vertisol RSG gate (WRB 2022 Ch 4, p 101)", "topics": [ "vertisol" ] }, { "page": "vitric_properties", "title": "Vitric properties (WRB 2022 Ch 3.2.16)", "topics": [ "vitric_properties" ] }, { "page": "vlm_pick_provider", "title": "Pick the best available VLM provider", "topics": [ "vlm_pick_provider" ] }, { "page": "vlm_provider", "title": "Construct a VLM provider chat object", "topics": [ "vlm_provider" ] }, { "page": "wosis_citation", "title": "Citation for data read from WoSIS-latest", "topics": [ "wosis_citation" ] }, { "page": "wosis_profile_to_pedon", "title": "Turn one WoSIS profile into a PedonRecord, with its horizons", "topics": [ "wosis_profile_to_pedon" ] }, { "page": "wrb06_code_to_rsg", "title": "WRB 2006 RSG code -> 2022 RSG name", "topics": [ "wrb06_code_to_rsg" ] }, { "page": "wrb2022_canonical", "title": "WRB 2022 canonical reference (parsed IUSS Working Group WRB 2022)", "topics": [ "wrb2022_canonical" ] }, { "page": "yermic_properties", "title": "Yermic properties (WRB 2022 Ch 3.2.17) - per-pedon test wrapping 'test_yermic_surface'.", "topics": [ "yermic_properties" ] } ], "_pkglogo": "https://github.com/hugomachadorodrigues/soilkey/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/hugomachadorodrigues/soilkey/raw/HEAD/README.md", "_rundeps": [ "cli", "data.table", "R6", "rlang", "yaml" ], "_vignettes": [ { "source": "v06_wosis_benchmark.Rmd", "filename": "v06_wosis_benchmark.html", "title": "Benchmarking soilKey against WoSIS", "engine": "knitr::rmarkdown", "headings": [ "1. Protocol overview", "2. Mini-benchmark on the canonical fixtures", "3. Confusion at the qualifier level", "4. Benchmark protocol against WoSIS (run-once, paper-grade)", "5. Reporting standards", "6. Offline canonical-fixture run (release-time sanity check)", "Summary", "7. v0.9.27 -- per-page retry + graceful degradation", "8. v0.9.30 -- bundled WoSIS sample for offline / CI testing" ], "created": "2026-09-22 08:07:27", "modified": "2026-09-22 08:07:27", "commits": 1 }, { "source": "v01_getting_started_pt.Rmd", "filename": "v01_getting_started_pt.html", "title": "Começando com soilKey (PT-BR)", "engine": "knitr::rmarkdown", "headings": [ "0. O começo de 30 segundos", "A. Interface Shiny (sem código)", "B. Uma chamada R, uma fixture", "1. Construindo um PedonRecord do zero", "2. Classificando nos três sistemas", "Atalho: classificar nos três sistemas em uma chamada", "3. Inspecionando o key trace", "4. Provenance + evidence grade", "5. 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